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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g081860.1 | ||||||||
Common Name | MTR_5g081860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 272aa MW: 31137.9 Da PI: 7.7991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 126 | 170 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + ++t+ q+ s+ qky Medtr5g081860.1 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.716 | 22 | 77 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-8 | 23 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.01E-11 | 25 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.14E-6 | 26 | 73 | No hit | No description |
PROSITE profile | PS51294 | 20.215 | 119 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-16 | 121 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-17 | 122 | 174 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.7E-11 | 123 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 123 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-8 | 126 | 170 | No hit | No description |
Pfam | PF00249 | 4.9E-11 | 126 | 170 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDLETLYSPY FMLDTNWLVE ESYQTEWSRE DNKKFESALA IYDKDTPDRW LKVAEMIPGK 60 TVFDVIKQYR ELVEDVSEIE AGNVPIPGYL ASSFTFEVVE KQNYDGNRRR HVTVRGSDHE 120 RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKVSSGG 180 KDKRRPSIHD ITTVTLTETS SPSENKSLLV NVSPMQQKMG WSTSHYNDGS PQGQDLYDCS 240 FHEAYAKLKV SGFATASRDF NKGAVFGIHA L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-18 | 27 | 102 | 11 | 86 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12753 | 0.0 | root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051984 | 0.0 | BT051984.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-K-6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616568.1 | 0.0 | MYB transcription factor MYB51 | ||||
Swissprot | Q8S9H7 | 3e-80 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | G7KBX0 | 0.0 | G7KBX0_MEDTR; MYB transcription factor MYB51 | ||||
STRING | GLYMA14G06750.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-87 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g081860.1 |
Entrez Gene | 11416901 |
Publications ? help Back to Top | |||
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